{ "_id": "6ac62ab0f511ae58c09a7019", "Package": "datasus", "Type": "Package", "Title": "An Interface to Brazilian Public Health Data", "Version": "0.16.1", "Authors@R": "person(\"Renato\", \"Prado Siqueira\", email = \"rpradosiqueira@gmail.com\", role = c(\"aut\", \"cre\"))", "Description": "Retrieves public health data from the Department of\nInformatics ('DATASUS') of the Brazilian Unified Health System\n('Sistema Unico de Saude', 'SUS') through its online tabulation\nservice and open-data catalog. It covers the Mortality\nInformation System ('SIM'), Live Birth Information System\n('SINASC'), Hospital Information System of the Unified Health\nSystem ('SIH/SUS'), Outpatient Information System of the\nUnified Health System ('SIA/SUS'), National Register of Health\nEstablishments ('CNES'), Notifiable Diseases Information System\n('SINAN'), National Immunization Program ('PNI'), Cancer\nInformation System ('SISCAN'), and Food and Nutrition\nSurveillance System ('SISVAN'). Contemporary sources from the\n'OpenDataSUS' portal include Events Supposedly Attributable to\nVaccination or Immunization ('ESAVI'), influenza-like illness\nnotifications from 'e-SUS Notifica', individual vaccination\ndoses, coronavirus disease 2019 (COVID-19) hospital occupancy,\nand record-level mortality, live-birth and hospital-admission\nmicrodata. Curated schemas, selective columns, multipart\ndownloads and chunk processing support memory-efficient\nanalysis of large files. The package also provides grouped\nepidemiological indicators, confidence intervals,\npopulation-denominator joins, epidemiological calendars, moving\naverages and direct age standardization. An offline reference\nfrom the Brazilian Institute of Geography and Statistics (IBGE)\nsupports territorial codes, joins and completion of geographic\ntime series.", "License": "GPL-3", "Encoding": "UTF-8", "URL": "https://github.com/rpradosiqueira/datasus", "BugReports": "https://github.com/rpradosiqueira/datasus/issues", "VignetteBuilder": "knitr", "Config/testthat/edition": "3", "RoxygenNote": "8.0.0", "Config/pak/sysreqs": "libicu-dev libxml2-dev libssl-dev libx11-dev", "Repository": "https://rpradosiqueira.r-universe.dev", "Date/Publication": "2026-10-06 14:36:01 UTC", "RemoteUrl": "https://github.com/rpradosiqueira/datasus", "RemoteRef": "HEAD", "RemoteSha": "fd507d2658934bec23ec80a7a3df445f3dbe4ab7", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-07 09:20:12 UTC", "User": "root" }, "Author": "Renato Prado Siqueira [aut, cre]", "Maintainer": "Renato Prado Siqueira ", "_user": "rpradosiqueira", "_type": "src", "_file": "datasus_0.16.1.tar.gz", "_fileid": "https://r2.ropensci.org/da68f064a97ed425d375bd40a62846494ee486cbe451aa87fe83d876ebe28e8a", "_filesize": 894727, "_sha256": "da68f064a97ed425d375bd40a62846494ee486cbe451aa87fe83d876ebe28e8a", "_expires": "2027-01-15T11:19:10.000Z", "_created": "2026-10-07T09:20:12.000Z", "_published": "2026-10-07T11:19:12.818Z", "_buildurl": "https://github.com/r-universe/rpradosiqueira/actions/runs/37597712616", "_status": "success", "_host": "GitHub-Actions", "_jobs": [ { "job": 112721597078, "time": 137, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11472393028" }, { "job": 112721596547, "time": 142, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11472298561" }, { "job": 112721596539, "time": 106, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "11477549645" }, { "job": 112721596606, "time": 108, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "11479445421" }, { "job": 112717583552, "time": 207, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "11472515725" }, { "job": 112721596551, "time": 98, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "11472851590" }, { "job": 112721596609, "time": 92, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11472536293" }, { "job": 112721596632, "time": 85, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "11471739447" }, { "job": 112721596546, "time": 91, "config": "windows-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11471334883" } ], "_upstream": "https://github.com/rpradosiqueira/datasus", "_commit": { "id": "fd507d2658934bec23ec80a7a3df445f3dbe4ab7", "author": "Renato Prado Siqueira ", "committer": "Renato Prado Siqueira ", "message": "Restore numeric TABNET filter code compatibility\n\nTranslate unambiguous numeric label prefixes to internal form values without changing exact matches or public signatures. Add offline regression coverage for modern queries and legacy wrappers, and document accepted filter codes. Refs #7.\n", "time": 1791297361 }, "_maintainer": { "name": "Renato Prado Siqueira", "email": "rpradosiqueira@gmail.com", "login": "rpradosiqueira", "description": "", "uuid": 24416914 }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.1.0", "role": "Depends" }, { "package": "datasusr", "version": ">= 0.1.0", "role": "Imports" }, { "package": "httr2", "role": "Imports" }, { "package": "jsonlite", "role": "Imports" }, { "package": "readr", "role": "Imports" }, { "package": "rvest", "role": "Imports" }, { "package": "stringi", "role": "Imports" }, { "package": "xml2", "role": "Imports" }, { "package": "foreign", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" } ], "_owner": "rpradosiqueira", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2026-30", "n": 2 }, { "week": "2026-32", "n": 1 }, { "week": "2026-33", "n": 2 }, { "week": "2026-41", "n": 1 } ], "_tags": [ { "name": "v0.16.0", "date": "2026-07-26" }, { "name": "v0.16.1", "date": "2026-08-05" } ], "_topics": [ "api", "brasil", "brazil", "datasus", "health-data" ], "_stars": 34, "_contributors": [ { "user": "rpradosiqueira", "count": 23, "uuid": 24416914 } ], "_userbio": { "uuid": 24416914, "type": "user", "name": "Renato Prado Siqueira", "followers": 79 }, "_downloads": { "count": 427, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/datasus" }, "_devurl": "https://github.com/rpradosiqueira/datasus", "_searchresults": 45, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/datasus.html", "extra/manual.pdf", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md" ], "_homeurl": "https://github.com/rpradosiqueira/datasus", "_realowner": "rpradosiqueira", "_cranurl": true, "_releases": [ { "version": "0.1.0", "date": "2017-06-12" }, { "version": "0.4.0", "date": "2017-07-25" }, { "version": "0.4.1", "date": "2018-05-16" }, { "version": "0.4.1.1", "date": "2019-06-09" }, { "version": "0.16.1", "date": "2026-09-08" }, { "version": "0.16.2", "date": "2026-10-06" } ], "_exports": [ "adicionar_territorio", "calcular_indicador", "calcular_taxa", "calendario_epidemiologico", "cnes", "completar_territorios", "datasus_catalogo", "datasus_dicionario", "datasus_opcoes", "datasus_padronizar", "datasus_proveniencia", "datasus_territorios", "datasus_validar_esquema", "esavi", "esus_sindrome_gripal", "extrair_codigo_ibge", "financiamento_sus", "intervalo_taxa", "juntar_populacao", "letalidade", "media_movel", "microdados_arquivos", "microdados_baixar", "microdados_catalogo", "microdados_ler", "normalizar_codigo_ibge", "ocupacao_hospitalar", "opendatasus_arquivos", "opendatasus_baixar", "opendatasus_catalogo", "opendatasus_ler", "opendatasus_processar", "opendatasus_recursos", "padronizar_idade", "pni_doses", "pni_imunizacoes", "populacao_padrao", "populacao_residente", "proporcao", "semana_epidemiologica", "sia_producao", "sih_microdados", "sih_morbidade", "sih_producao", "sim", "sim_evita10_bruf", "sim_evita10_mun", "sim_evita10_uf", "sim_evitb10_bruf", "sim_evitb10_mun", "sim_evitb10_uf", "sim_inf10_bruf", "sim_inf10_mun", "sim_inf10_uf", "sim_microdados", "sim_obt10_bruf", "sim_obt10_mun", "sim_obt10_uf", "sinan", "sinan_dengue", "sinan_mpox", "sinasc", "sinasc_microdados", "sinasc_nv_bruf", "sinasc_nv_mun", "sinasc_nv_uf", "siscan", "sisvan", "sivep_gripe", "taxa_incidencia", "taxa_mortalidade", "validar_codigo_ibge" ], "_help": [ { "page": "datasus-package", "title": "datasus: Brazilian public health data", "topics": [ "datasus-package", "datasus" ] }, { "page": "adicionar_territorio", "title": "Add territorial attributes to a data frame", "topics": [ "adicionar_territorio" ] }, { "page": "calcular_indicador", "title": "Aggregate epidemiological indicators", "topics": [ "calcular_indicador" ] }, { "page": "calcular_taxa", "title": "Calculate crude epidemiological rates", "topics": [ "calcular_taxa" ] }, { "page": "calendario_epidemiologico", "title": "Generate a Brazilian epidemiological calendar", "topics": [ "calendario_epidemiologico" ] }, { "page": "cnes", "title": "Query the National Registry of Health Establishments (CNES)", "topics": [ "cnes" ] }, { "page": "completar_territorios", "title": "Complete territorial and temporal combinations", "topics": [ "completar_territorios" ] }, { "page": "datasus_catalogo", "title": "List supported DATASUS datasets", "topics": [ "datasus_catalogo" ] }, { "page": "datasus_dicionario", "title": "Inspect curated DATASUS field dictionaries", "topics": [ "datasus_dicionario" ] }, { "page": "datasus_opcoes", "title": "Inspect the options of a DATASUS query", "topics": [ "datasus_opcoes" ] }, { "page": "datasus_padronizar", "title": "Standardize common fields in DATASUS microdata", "topics": [ "datasus_padronizar" ] }, { "page": "datasus_proveniencia", "title": "Retrieve DATASUS provenance metadata", "topics": [ "datasus_proveniencia" ] }, { "page": "datasus_territorios", "title": "List Brazilian territories", "topics": [ "datasus_territorios" ] }, { "page": "datasus_validar_esquema", "title": "Validate curated DATASUS schemas", "topics": [ "datasus_validar_esquema" ] }, { "page": "esavi", "title": "Read anonymous ESAVI notifications", "topics": [ "esavi" ] }, { "page": "esus_sindrome_gripal", "title": "Read e-SUS Notifica mild influenza-like illness records", "topics": [ "esus_sindrome_gripal" ] }, { "page": "extrair_codigo_ibge", "title": "Extract IBGE codes from DATASUS labels", "topics": [ "extrair_codigo_ibge" ] }, { "page": "financiamento_sus", "title": "Query legacy SUS financing tables", "topics": [ "financiamento_sus" ] }, { "page": "intervalo_taxa", "title": "Calculate exact Poisson confidence intervals for rates", "topics": [ "intervalo_taxa" ] }, { "page": "juntar_populacao", "title": "Join validated population denominators", "topics": [ "juntar_populacao" ] }, { "page": "letalidade", "title": "Calculate grouped case fatality", "topics": [ "letalidade" ] }, { "page": "media_movel", "title": "Calculate moving averages", "topics": [ "media_movel" ] }, { "page": "microdados_arquivos", "title": "Discover raw DATASUS microdata files", "topics": [ "microdados_arquivos" ] }, { "page": "microdados_baixar", "title": "Download raw DATASUS DBC files", "topics": [ "microdados_baixar" ] }, { "page": "microdados_catalogo", "title": "List supported DATASUS microdata files", "topics": [ "microdados_catalogo" ] }, { "page": "microdados_ler", "title": "Download and read raw DATASUS microdata", "topics": [ "microdados_ler" ] }, { "page": "normalizar_codigo_ibge", "title": "Normalize IBGE territorial codes", "topics": [ "normalizar_codigo_ibge" ] }, { "page": "ocupacao_hospitalar", "title": "Read COVID-19 hospital occupancy records", "topics": [ "ocupacao_hospitalar" ] }, { "page": "opendatasus_arquivos", "title": "Expand downloadable files from OpenDataSUS resources", "topics": [ "opendatasus_arquivos" ] }, { "page": "opendatasus_baixar", "title": "Download a resource from OpenDataSUS", "topics": [ "opendatasus_baixar" ] }, { "page": "opendatasus_catalogo", "title": "Search the OpenDataSUS catalog", "topics": [ "opendatasus_catalogo" ] }, { "page": "opendatasus_ler", "title": "Download and read tabular OpenDataSUS data", "topics": [ "opendatasus_ler" ] }, { "page": "opendatasus_processar", "title": "Process large OpenDataSUS CSV resources in chunks", "topics": [ "opendatasus_processar" ] }, { "page": "opendatasus_recursos", "title": "List resources from an OpenDataSUS dataset", "topics": [ "opendatasus_recursos" ] }, { "page": "padronizar_idade", "title": "Directly standardize rates by age", "topics": [ "padronizar_idade" ] }, { "page": "pni_doses", "title": "Read individual PNI dose records", "topics": [ "pni_doses" ] }, { "page": "pni_imunizacoes", "title": "Query legacy immunization data from PNI", "topics": [ "pni_imunizacoes" ] }, { "page": "populacao_padrao", "title": "Retrieve ready-made standard populations", "topics": [ "populacao_padrao" ] }, { "page": "populacao_residente", "title": "Query resident population estimates", "topics": [ "populacao_residente" ] }, { "page": "proporcao", "title": "Calculate grouped proportions", "topics": [ "proporcao" ] }, { "page": "semana_epidemiologica", "title": "Convert dates to Brazilian epidemiological weeks", "topics": [ "semana_epidemiologica" ] }, { "page": "sia_producao", "title": "Query ambulatory production from SIA/SUS", "topics": [ "sia_producao" ] }, { "page": "sih_microdados", "title": "Read SIH hospitalization microdata", "topics": [ "sih_microdados" ] }, { "page": "sih_morbidade", "title": "Query hospital morbidity from SIH/SUS", "topics": [ "sih_morbidade" ] }, { "page": "sih_producao", "title": "Query hospital production from SIH/SUS", "topics": [ "sih_producao" ] }, { "page": "sim", "title": "Query mortality data from SIM", "topics": [ "sim" ] }, { "page": "sim_evita10_bruf", "title": "Scrapes SIM's ICD-10 evitale causes data from regions", "topics": [ "sim_evita10_bruf" ] }, { "page": "sim_evita10_mun", "title": "Scrapes SIM's ICD-10 evitable causes data from cities", "topics": [ "sim_evita10_mun" ] }, { "page": "sim_evita10_uf", "title": "Scrapes SIM's ICD-10 evitable causes data from ufs", "topics": [ "sim_evita10_uf" ] }, { "page": "sim_evitb10_bruf", "title": "Scrapes SIM's ICD-10 evitale causes data from regions", "topics": [ "sim_evitb10_bruf" ] }, { "page": "sim_evitb10_mun", "title": "Scrapes SIM's ICD-10 evitable causes data from cities", "topics": [ "sim_evitb10_mun" ] }, { "page": "sim_evitb10_uf", "title": "Scrapes SIM's ICD-10 evitable causes data from ufs", "topics": [ "sim_evitb10_uf" ] }, { "page": "sim_inf10_bruf", "title": "Scrapes SIM's ICD-10 child mortality data from regions", "topics": [ "sim_inf10_bruf" ] }, { "page": "sim_inf10_mun", "title": "Scrapes SIM's ICD-10 child mortality data from cities", "topics": [ "sim_inf10_mun" ] }, { "page": "sim_inf10_uf", "title": "Scrapes SIM's ICD-10 child mortality data from ufs", "topics": [ "sim_inf10_uf" ] }, { "page": "sim_microdados", "title": "Read SIM death microdata", "topics": [ "sim_microdados" ] }, { "page": "sim_obt10_bruf", "title": "Scrapes SIM's ICD-10 data from regions", "topics": [ "sim_obt10_bruf" ] }, { "page": "sim_obt10_mun", "title": "Scrapes SIM's ICD-10 data from cities", "topics": [ "sim_obt10_mun" ] }, { "page": "sim_obt10_uf", "title": "Scrapes SIM's ICD-10 data from UF's", "topics": [ "sim_obt10_uf" ] }, { "page": "sinan", "title": "Query notifiable diseases and conditions from SINAN", "topics": [ "sinan" ] }, { "page": "sinan_dengue", "title": "Read current SINAN dengue microdata", "topics": [ "sinan_dengue" ] }, { "page": "sinan_mpox", "title": "Read current e-SUS SINAN Mpox microdata", "topics": [ "sinan_mpox" ] }, { "page": "sinasc", "title": "Query live-birth data from SINASC", "topics": [ "sinasc" ] }, { "page": "sinasc_microdados", "title": "Read SINASC live birth microdata", "topics": [ "sinasc_microdados" ] }, { "page": "sinasc_nv_bruf", "title": "Scrapes SINASC data from regions", "topics": [ "sinasc_nv_bruf" ] }, { "page": "sinasc_nv_mun", "title": "Scrapes SINASC data from cities", "topics": [ "sinasc_nv_mun" ] }, { "page": "sinasc_nv_uf", "title": "Scrapes SINASC data from ufs", "topics": [ "sinasc_nv_uf" ] }, { "page": "siscan", "title": "Query cancer screening and diagnostic exams from SISCAN", "topics": [ "siscan" ] }, { "page": "sisvan", "title": "Query legacy nutritional surveillance data from SISVAN", "topics": [ "sisvan" ] }, { "page": "sivep_gripe", "title": "Read SIVEP-Gripe severe acute respiratory syndrome microdata", "topics": [ "sivep_gripe" ] }, { "page": "taxa_incidencia", "title": "Calculate grouped incidence rates", "topics": [ "taxa_incidencia" ] }, { "page": "taxa_mortalidade", "title": "Calculate grouped mortality rates", "topics": [ "taxa_mortalidade" ] }, { "page": "validar_codigo_ibge", "title": "Validate IBGE territorial codes", "topics": [ "validar_codigo_ibge" ] } ], "_readme": "https://github.com/rpradosiqueira/datasus/raw/HEAD/README.md", "_rundeps": [ "askpass", "bit", "bit64", "cli", "clipr", "cpp11", "crayon", "curl", "datasusr", "dplyr", "generics", "glue", "hms", "httr", "httr2", "jsonlite", "lifecycle", "magrittr", "mime", "openssl", "pillar", "pkgconfig", "prettyunits", "progress", "purrr", "R6", "readr", "rlang", "rvest", "selectr", "stringi", "stringr", "sys", "tibble", "tidyr", "tidyselect", "tzdb", "utf8", "vctrs", "vroom", "withr", "xml2" ], "_vignettes": [ { "source": "accessing-datasus.Rmd", "filename": "accessing-datasus.html", "title": "Accessing DATASUS tables", "author": "Renato Prado Siqueira", "engine": "knitr::rmarkdown", "headings": [ "Overview", "Discover datasets", "Vital statistics", "Health services and population", "Surveillance, screening and financing", "Provenance and reproducibility" ], "created": "2026-07-26 22:47:05", "modified": "2026-07-26 22:47:05", "commits": 1 }, { "source": "geography-and-analysis.Rmd", "filename": "geography-and-analysis.html", "title": "Geography and epidemiological analysis", "author": "Renato Prado Siqueira", "engine": "knitr::rmarkdown", "headings": [ "Overview", "Territorial reference", "Add geography to observations", "Make missing combinations explicit", "Join population denominators", "Rates, proportions and case fatality", "Epidemiological calendar and moving averages", "Direct age standardization" ], "created": "2026-07-26 22:47:05", "modified": "2026-07-26 22:47:05", "commits": 1 }, { "source": "Introduction_to_datasus.Rmd", "filename": "Introduction_to_datasus.html", "title": "Introduction to datasus", "author": "Renato Prado Siqueira", "engine": "knitr::rmarkdown", "headings": [ "A R Interface to the DATASUS's data", "Installation", "Functions", "Examples", "SIM and SINASC", "SIH/SUS, SIA/SUS and CNES", "Population, hospital morbidity and SINAN", "PNI, SISCAN, SISVAN and financing", "OpenDataSUS microdata", "Raw DBC/DBF microdata", "Territorial reference", "Epidemiological analysis", "Query conventions" ], "created": "2017-06-12 01:57:28", "modified": "2026-07-26 22:47:05", "commits": 3 }, { "source": "large-files-and-microdata.Rmd", "filename": "large-files-and-microdata.html", "title": "Large files, raw microdata and provenance", "author": "Renato Prado Siqueira", "engine": "knitr::rmarkdown", "headings": [ "Overview", "Traditional DBC/DBF microdata", "Inspect schemas before reading", "Selected OpenDataSUS columns", "Process CSV files in bounded memory", "Cache and provenance", "Practical strategy" ], "created": "2026-07-26 22:47:05", "modified": "2026-07-26 22:47:05", "commits": 1 }, { "source": "modern-surveillance.Rmd", "filename": "modern-surveillance.html", "title": "Modern surveillance data 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